Package: mstknnclust 1.0.0
mstknnclust: MST-kNN Clustering Algorithm
Implements the MST-kNN clustering algorithm proposed by Inostroza-Ponta (2008) <https://trove.nla.gov.au/work/28729389>. The algorithm determines the number of clusters automatically by recursively intersecting the Minimum Spanning Tree (MST) and the k-Nearest Neighbor (kNN) proximity graphs constructed from a pairwise distance matrix. The value of k is selected via a connectivity criterion (the smallest k such that the kNN graph is connected, bounded by floor(log(n))). The package requires only a distance matrix as input and returns cluster assignments, an igraph network, and partition metadata.
Authors:
mstknnclust_1.0.0.tar.gz
mstknnclust_1.0.0.zip(r-4.7)mstknnclust_1.0.0.zip(r-4.6)mstknnclust_1.0.0.zip(r-4.5)
mstknnclust_1.0.0.tgz(r-4.6-any)mstknnclust_1.0.0.tgz(r-4.5-any)
mstknnclust_1.0.0.tar.gz(r-4.7-any)mstknnclust_1.0.0.tar.gz(r-4.6-any)
mstknnclust_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mstknnclust/json (API)
| # Install 'mstknnclust' in R: |
| install.packages('mstknnclust', repos = c('https://jorgeklz.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jorgeklz/package-mstknnclust/issues
Pkgdown/docs site:https://jorgeklz.github.io
- dslanguages - Indo-European languages dataset
- dsyeastexpression - Budding Yeast dataset
Last updated from:931725cec2. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 147 | ||
| source / vignettes | OK | 211 | ||
| linux-release-x86_64 | OK | 144 | ||
| macos-release-arm64 | OK | 210 | ||
| macos-oldrel-arm64 | OK | 172 | ||
| windows-devel | OK | 71 | ||
| windows-release | OK | 62 | ||
| windows-oldrel | OK | 75 | ||
| wasm-release | OK | 119 |
Exports:generate.resultsmst.knnonly.single.graphs
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Indo-European languages dataset | dslanguages |
| Budding Yeast dataset | dsyeastexpression |
| Performs the MST-kNN clustering algorithm | mst.knn |
